Edgar Garriga
What I Do
Research Experience
Sept 2024 - Present
MSF OCBA, Doctors Without Borders (Barcelona, Spain)ICT Emergency Response Reference
Provide solutions for communication and data security in emergency and unstable scenarios.
June - Sept 2024
Barcelona Supercomputing Center (Barcelona, Spain)Workflow Management Software Engineer
Developer of the workflow manager of the Earth Science department. Mainly in Python3, using CI, containers and HPC like Marenostrum. European projects on high scale and level.
March 2022 - Nov 2022
Sanger Institute (Hixton, United Kingdom)Senior Bioinformatician
The main goal is to develop a cloud solution to launch/run pipelines for the users of the Human Genetics department. At the same time, it is required to convert the pipelines to Nextflow using modules. Nextflow tower was implemented making it easier for the users to deploy their pipelines and the catalog of the core team build for them.
2017-2022
Center for Genomics Regulation (Barcelona, Spain)Ph.D - New algorithmic contributions for large scale multiple sequence alignments of protein sequences
The main goal is to implement a new MSA algorithm to align large datasets. Another part is developing reproducible pipelines with Nextflow and running them in the cloud using AWS, Docker, or Conda. I published multiple articles in scientific journals.
August 2018
Open Bioinformatics Foundation (Barcelona, Spain)Google Summer of Code - Implement the support for Research Object specification into Nextflow framework
I obtain a Google grant to develop the ResearchObject in Nextflow. I was using Groovy to add the functionality into the core using Github to collaborate with mentors. The developed provenance feature is used in Nextflow, and the project was presented at international conferences.
September 2017
Universitat Autonoma Barcelona (Barcelona, Spain)Capstone Project - MSA for the Big Data era
For the MSc thesis, I implemented an algorithm to perform high-scale MSA. I wrote it in C/C++ and Python, using the container’s technology to ensure reproducibility and HPC-Cloud Computing. I was able to publish an article showing the ability to align 1.4 million sequences.
December 2015
Simpson College (Indianola, United States of America)Capstone Project - Creating DNA Libraries Using Thermodynamics and Sequence Alignment Algorithms
For the Bachelor's undergrad capstone, I did a web server in an international and multidisciplinary team. The aim was to produce random DNA sequences with a user's specific temperature range. I used JavaScript and other web-oriented technologies to build all the required parts.
2014 - 2015
Politechnika Lodzka (Lodz, Poland)European Project Semester - Noise Management at EU Airports, Case of Lodz
On the Erasmus+, the European Project Semester was proposed to perform a study about the noise of the Lodz's airport from a theoretical point of view and performing experiments in an anechoic room. I worked with an analytical approach and a practical proposal, using databases and the physics of the sound to solve it. A report was delivered with the analysis and the proposed solution, with a campaign to explain the study to the citizens.
Education
Ph.D. in Bioinformatics
MSc in Bioinformatics
Computer Science
Computer Science
Computer Science
Computer Science
Humanitarian Experience
Greenpeace International
May - June '24Volunteer - Deckhand
Deckhand / RHIB driver / Diver on the S/Y Witness. Doing a transit from Horta (Azores) to South of Spain. Helping on multiple task during the transit on the deck and bridge. Later RHIB driver and diver for the campaign.
Emergency NGO
September '23 - March '24RHIB driver - SAR Logistician
RHIB Driver on the MV Life Support for the SAR in the central Mediterranean operations. Taking care of the trainings and preparing the SAR teams. And implementing a system to take care of the logistics for the Search and Rescue team.
Medecins Sans Frontieres
June - August '23SAR Technician
SAR Technician in the MV Geo Barents doing task preparing the deck and as a logistician for the SAR in the central Mediterranean operations.
Emergency NGO
March - June '23RHIB driver - Rescuer
RHIB Driver/Rescuer on the MV Life Support for the SAR in the central Mediterranean operations.
SOS Humanity
November - January '22RHIB driver
RHIB Driver on the MV Humanity 1 for the SAR in the central Mediterranean operations.
Salvamento Maritimo Humanitario
January - February '20RHIB driver
RHIB Driver on the MV AitaMari for the SAR in the central Mediterranean operations.
Refugee Rescue UK
September '19Lifeguard
Volunteer of the RHIB for the SAR operations in the Aegena sea.
Proactiva Open Arms
December '18RHIB Driver
RHIB Driver on the SV Astral for the SAR in the central Mediterranean operations.
Proactiva
Summer '18Coordinator
Coordinator of a team of 16 lifeguards in Mataro and skipper of the rescue jetski.
Proactiva OpenArms
July '17Lifeguard
Volunteer of the RHIB on the MV OpenArms for the SAR in the central Mediterranean operations
Proactiva OpenArms
April '17Lifeguard
Volunteer of the RHIB for the SAR operations in the Aegena sea.
Proteccion Civil
June '10 - September '12RHIB driver, ambulance driver, lifeguard
Maritime Certificates
Deck rating
Officer of the Watch, Less Than 500 GT, Near-Coastal
Medical First Aid
GMDSS Restricted Operator
Proeficiency in Fast Rescue Boats
Proficiency in Survival Craft and Rescue Boats other than Fast Rescue Boats
Security Awareness certificate
Basic Safety Training
Patron de Embarcaciones de Recreo
Design Skills
UI/UX Design
Graphic Design
Logo Design
Coding Skills
HTML / CSS
Java
JavaScript
Python
R
Flutter
React
Publications
Towards the accurate alignment of over a million protein sequences: Current state of the art
Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation
Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method
Nextflow integration for the Research Object Specification.
Teaching / Trainer
Nextflow Workshops
Barcelona, Spain.Online workshop
Multiple workshops and tutorials for a diverse audience about Nextflow.
NGSchool
Barcelona, Spain.Online workshop
How to build reproducible and scalable pipelines with Nextflow.
Bachelor in Human Biology
Barcelona, Spain.Pompeu Fabra University
Supervisor on a project about selenoprotein annotation.
Bachelor in Bioinformatics
Barcelona, Spain.ESCI - Pompeu Fabra University
Teaching algorithms and programming on clustering and Multiple Sequence Alignment.